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Official Description

Preparation of fecal microbiota for instillation, including assessment of donor specimen

© Copyright 2026 American Medical Association. All rights reserved.

Common Language Description

Fecal microbiota transplantation (FMT), also known as fecal bacteriotherapy, is a medical procedure aimed at treating recurrent Clostridium difficile infections. This treatment involves the transfer of fecal matter from a healthy donor into the gastrointestinal tract of an infected patient. The primary goal of FMT is to restore the balance of normal bacterial flora in the patient's intestines, which can be disrupted due to antibiotic use or infection. The process begins with the careful selection of a donor, whose stool sample must be free from infectious diseases such as hepatitis A, B, and C, HIV-1 and HIV-2, as well as other conditions that could compromise the safety of the transplant. The preparation of the fecal microbiota for instillation includes a thorough assessment of the donor specimen, ensuring that it meets strict health criteria. The stool sample is then processed through various steps, including homogenization and filtration, to prepare it for administration, which is typically performed via enema or nasogastric tube. The CPT® Code 44705 specifically captures the physician's work involved in the assessment and preparation of the fecal microbiota, highlighting the importance of meticulous donor screening and sample preparation in the success of the procedure.

© Copyright 2026 Coding Ahead. All rights reserved.

1. Indications

The procedure of fecal microbiota transplantation (FMT) is indicated for patients suffering from recurrent Clostridium difficile infections. This condition often arises after antibiotic treatment, which can disrupt the natural balance of gut bacteria, leading to severe gastrointestinal symptoms. FMT is performed to restore the normal microbiota in the intestines, thereby alleviating the symptoms associated with this infection.

  • Recurrent Clostridium difficile infection This is the primary indication for FMT, particularly in cases where standard treatments have failed.

2. Procedure

The procedure for fecal microbiota transplantation involves several critical steps to ensure the safety and efficacy of the treatment. Each step is essential for preparing the fecal microbiota for instillation into the patient.

  • Step 1: Donor Selection The first step involves selecting a suitable donor whose stool sample will be used for transplantation. The donor must be screened for infectious diseases, including hepatitis A, B, and C, as well as HIV-1 and HIV-2. Additionally, the donor should be free from parasitic diseases, yeast overgrowth, and other digestive tract conditions that could compromise the safety of the transplant.
  • Step 2: Donor Specimen Assessment Once a donor is selected, their stool sample undergoes a thorough assessment. This includes culturing the sample for enteric bacterial pathogens and screening it by light microscopy for the presence of ova and parasites, following standard laboratory protocols to ensure the sample is safe for use.
  • Step 3: Sample Preparation After the assessment, the stool sample is prepared for instillation. This preparation involves choosing an appropriate diluent, such as sterile saline, to facilitate the process. The stool is then homogenized to create a uniform mixture and filtered to remove any particulate matter, ensuring that only the beneficial microbiota is administered to the patient.
  • Step 4: Administration The final step is the actual administration of the prepared fecal microbiota into the patient’s gastrointestinal tract. This is typically done via enema or nasogastric tube, allowing the microbiota to reach the intestines effectively.

3. Post-Procedure

After the fecal microbiota transplantation procedure, patients are monitored for any immediate adverse reactions. It is essential to observe the patient for signs of infection or gastrointestinal distress. Recovery may vary, but many patients experience a resolution of symptoms associated with Clostridium difficile infection. Follow-up care may include additional monitoring and assessments to ensure the success of the transplant and the restoration of normal gut flora. Patients are also advised on dietary considerations and any necessary lifestyle modifications to support their recovery.

Short Descr PREPARE FECAL MICROBIOTA
Medium Descr PREPARE FECAL MICROBIOTA FOR INSTILLATION
Long Descr Preparation of fecal microbiota for instillation, including assessment of donor specimen
Status Code Not Valid for Medicare Purposes
Global Days XXX - Global Concept Does Not Apply
PC/TC Indicator (26, TC) 9 - Not Applicable
Multiple Procedures (51) 9 - Concept does not apply.
Bilateral Surgery (50) 9 - Concept does not apply.
Physician Supervisions 09 - Concept does not apply.
Assistant Surgeon (80, 82) 9 - Concept does not apply.
Co-Surgeons (62) 9 - Concept does not apply.
Team Surgery (66) 9 - Concept does not apply.
Diagnostic Imaging Family 99 - Concept Does Not Apply
APC Status Indicator Code Not Recognized by OPPS when submitted on Outpatient Hospital Part B Bill Type (12x/13x)
Type of Service (TOS) 2 - Surgery
Berenson-Eggers TOS (BETOS) T2D - Other tests - other
MUE 1
CCS Clinical Classification 95 - Other non-OR lower GI therapeutic procedures
Date
Action
Notes
2022-12-22 Note "or enema" removed from guideline per Errata and Technical Corrections – CPT® 2023.
2013-01-01 Added Added
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