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Official Description

Oncology (prostate), mRNA gene expression profiling by real-time RT-PCR of 46 genes (31 content and 15 housekeeping), utilizing formalin-fixed paraffin-embedded tissue, algorithm reported as a disease-specific mortality risk score

© Copyright 2026 American Medical Association. All rights reserved.

Common Language Description

The CPT® Code 81541 pertains to a specific molecular genomic test utilized in the field of oncology, particularly for prostate cancer. This test employs real-time reverse transcription polymerase chain reaction (RT-PCR) to analyze the expression of messenger RNA (mRNA) from a total of 46 genes, which includes 31 content genes that are indicative of tumor behavior and 15 housekeeping genes that serve as controls to ensure the accuracy of the test results. The tissue sample used for this analysis is derived from formalin-fixed paraffin-embedded prostate tumor tissue, which is a standard method for preserving biological samples for histological examination. The primary focus of this test is to evaluate the expression levels of cell cycle progression (CCP) genes, which are critical in determining the likelihood of prostate cancer progression. The results of the test are reported as a disease-specific mortality risk score that ranges from -3 to +3. This score reflects the levels of CCP gene expression, with higher scores suggesting an increased risk of tumor growth or other adverse clinical outcomes. The insights gained from this genomic profiling can significantly influence clinical decision-making, particularly in formulating treatment strategies such as opting for active surveillance versus pursuing more aggressive surgical interventions.

© Copyright 2026 Coding Ahead. All rights reserved.

1. Indications

The CPT® Code 81541 is indicated for use in the assessment of prostate cancer progression risk. The following conditions and scenarios warrant the performance of this molecular genomic test:

  • Prostate Cancer Diagnosis The test is utilized in patients who have been diagnosed with prostate cancer to evaluate the potential for disease progression.
  • Risk Stratification It aids in stratifying patients based on their risk of disease progression, which is crucial for determining appropriate management strategies.
  • Guiding Treatment Decisions The results can inform treatment planning, particularly in deciding between active surveillance and more aggressive treatment options such as surgery.

2. Procedure

The procedure for CPT® Code 81541 involves several critical steps to ensure accurate gene expression profiling. The following outlines the procedural steps:

  • Step 1: Sample Collection A formalin-fixed paraffin-embedded tissue sample is obtained from the prostate tumor. This sample is essential for the subsequent analysis and must be handled according to standard protocols to preserve the integrity of the mRNA.
  • Step 2: RNA Extraction The mRNA is extracted from the collected tissue sample. This step is crucial as it isolates the genetic material necessary for the real-time RT-PCR analysis.
  • Step 3: Real-Time RT-PCR The extracted mRNA undergoes real-time reverse transcription polymerase chain reaction (RT-PCR). This technique amplifies the mRNA from the 46 targeted genes, allowing for quantification of gene expression levels.
  • Step 4: Data Analysis The expression levels of the 31 content genes and 15 housekeeping genes are analyzed using a specific algorithm. This analysis generates a disease-specific mortality risk score based on the expression patterns observed.
  • Step 5: Reporting Results The final step involves reporting the results, which include the calculated risk score ranging from -3 to +3. This score provides clinicians with valuable information regarding the likelihood of tumor progression and assists in making informed treatment decisions.

3. Post-Procedure

After the completion of the procedure associated with CPT® Code 81541, there are several considerations for post-procedure care. The results of the gene expression profiling will typically be reviewed in conjunction with other clinical findings and diagnostic tests. Clinicians will discuss the implications of the risk score with the patient, which may influence the management plan. Depending on the score, patients may be advised to consider options such as active surveillance, which involves regular monitoring of the cancer without immediate treatment, or more aggressive interventions like surgery. It is essential for patients to have follow-up appointments to reassess their condition and adjust treatment plans as necessary based on ongoing evaluations and any changes in their clinical status.

Short Descr ONC PROSTATE MRNA 46 GENES
Medium Descr ONC PRST8 MRNA GENE XPRSN PRFL RT-PCR 46 GENES
Long Descr Oncology (prostate), mRNA gene expression profiling by real-time RT-PCR of 46 genes (31 content and 15 housekeeping), utilizing formalin-fixed paraffin-embedded tissue, algorithm reported as a disease-specific mortality risk score
Status Code Statutory Exclusion (from MPFS, may be paid under other methodologies)
Global Days XXX - Global Concept Does Not Apply
PC/TC Indicator (26, TC) 9 - Not Applicable
Multiple Procedures (51) 9 - Concept does not apply.
Bilateral Surgery (50) 9 - Concept does not apply.
Physician Supervisions 09 - Concept does not apply.
Assistant Surgeon (80, 82) 9 - Concept does not apply.
Co-Surgeons (62) 9 - Concept does not apply.
Team Surgery (66) 9 - Concept does not apply.
Diagnostic Imaging Family 99 - Concept Does Not Apply
CLIA Waived (QW) No
APC Status Indicator Service Paid under Fee Schedule or Payment System other than OPPS
Type of Service (TOS) 5 - Diagnostic Laboratory
Berenson-Eggers TOS (BETOS) none
MUE 1
GA Waiver of liability statement issued as required by payer policy, individual case
Date
Action
Notes
2018-01-01 Added Code Added.
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Description
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