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Code deleted, see 81200-81479

Official Description

Molecular diagnostics; amplification, target, multiplex, first 2 nucleic acid sequences

© Copyright 2026 American Medical Association. All rights reserved.

Common Language Description

A molecular diagnostics test, identified by CPT® Code 83900, involves the amplification of nucleic acid sequences to facilitate the analysis of genetic material. This procedure is crucial for identifying specific genes and proteins, as well as understanding their interactions within cells. Molecular diagnostics focuses on the patterns of gene and protein activity, allowing for the detection of changes that may indicate the presence of diseases such as cancer, infections, and various genetic disorders, including hematological and neurological conditions. The process begins with the collection of a biological sample, which may include blood, urine, sputum, or tissue. Following sample collection, the nucleic acid—either DNA or RNA—is isolated and prepared for amplification. The target amplification process generates multiple copies of the selected nucleic acid sequence, enabling further analysis. This amplification can be repeated to produce even more copies, enhancing the sensitivity of the test. When multiple nucleic acid sequences are involved, the first two sequences are reported using CPT® Code 83900, while additional sequences are reported with CPT® Code 83901. The use of multiplex technology, which allows for the simultaneous amplification of numerous targets—potentially up to 100 or more—demonstrates the advanced capabilities of molecular diagnostics in modern medicine.

© Copyright 2026 Coding Ahead. All rights reserved.

1. Indications

The molecular diagnostics test using CPT® Code 83900 is indicated for various clinical scenarios, particularly when there is a need to identify specific genetic material associated with diseases. The following conditions may warrant the use of this procedure:

  • Cancer Diagnosis - To detect genetic mutations or alterations that may indicate the presence of cancerous cells.
  • Infectious Diseases - To identify pathogens through their nucleic acid sequences, aiding in the diagnosis of infections.
  • Hematological Disorders - To assess genetic factors related to blood disorders, including leukemias and anemias.
  • Neurological Disorders - To investigate genetic contributions to neurological conditions and diseases.
  • Inherited Genetic Disorders - To diagnose genetic conditions that may be passed down through families.

2. Procedure

The procedure for molecular diagnostics using CPT® Code 83900 involves several key steps, each critical to the successful amplification and analysis of nucleic acid sequences. The following outlines the procedural steps:

  • Step 1: Sample Collection - A biological sample, such as blood, urine, sputum, or tissue, is collected from the patient. This sample serves as the source of nucleic acids for the diagnostic test.
  • Step 2: Nucleic Acid Isolation - The nucleic acid (DNA or RNA) is isolated from the collected sample. This step is essential to ensure that the target sequences are available for amplification and is typically performed as a separately reportable procedure.
  • Step 3: Target Amplification - The isolated nucleic acid undergoes target amplification, a process that generates multiple copies of the specific nucleic acid sequence. This amplification increases the quantity of the target sequence, making it easier to analyze.
  • Step 4: Multiplex Technology Application - Using multiplex technology, the procedure can amplify multiple nucleic acid sequences simultaneously. This technology employs microarray systems, allowing for the concurrent amplification of up to 100 or more targets, enhancing the efficiency and breadth of the diagnostic test.
  • Step 5: Reporting - The results of the amplification are documented. If the procedure involves the amplification of more than two nucleic acid sequences, the first two are reported using CPT® Code 83900, while any additional sequences are reported with CPT® Code 83901.

3. Post-Procedure

After the molecular diagnostics procedure is completed, the results are analyzed and interpreted by qualified healthcare professionals. The findings can provide critical information for diagnosing diseases, guiding treatment decisions, and informing patient management strategies. It is important to ensure that the results are communicated effectively to the healthcare team and the patient. Follow-up care may be necessary depending on the outcomes of the test, particularly if a diagnosis of a serious condition, such as cancer or a genetic disorder, is made. Additionally, proper documentation of the procedure and results is essential for compliance and billing purposes.

Short Descr MOLECULE NUCLEIC AMPLI 2 SEQ
Medium Descr MOLECULAR DX AMP TARGET MULTIPLEX 1ST 2 SEQ
Long Descr Molecular diagnostics; amplification, target, multiplex, first 2 nucleic acid sequences
Status Code Statutory Exclusion (from MPFS, may be paid under other methodologies)
Global Days XXX - Global Concept Does Not Apply
PC/TC Indicator (26, TC) 9 - Not Applicable
Multiple Procedures (51) 9 - Concept does not apply.
Bilateral Surgery (50) 9 - Concept does not apply.
Physician Supervisions 09 - Concept does not apply.
Assistant Surgeon (80, 82) 9 - Concept does not apply.
Co-Surgeons (62) 9 - Concept does not apply.
Team Surgery (66) 9 - Concept does not apply.
Diagnostic Imaging Family 99 - Concept Does Not Apply
APC Status Indicator Discontinued Code
Type of Service (TOS) 5 - Diagnostic Laboratory
Berenson-Eggers TOS (BETOS) none
MUE Not applicable/unspecified.
CCS Clinical Classification 233 - Laboratory - Chemistry and Hematology
Date
Action
Notes
2013-01-01 Deleted Code deleted, see 81200-81479
2009-01-01 Changed Code description changed
2008-01-01 Changed Code description changed.
2006-01-01 Added Code added.
1992-12-31 Deleted Code deleted.
Code
Description
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