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Official Description

Culture, bacterial; quantitative colony count, urine

© Copyright 2026 American Medical Association. All rights reserved.

Common Language Description

The CPT® Code 87086 refers to a laboratory procedure known as a bacterial culture, specifically focusing on a quantitative colony count of urine. This test is essential for identifying the presence of bacterial colonies within a urine sample and quantifying their concentration. The presence of bacteria in urine can be indicative of various urinary tract infections (UTIs), which may be acute or chronic in nature. Common conditions associated with positive bacterial cultures include pyelonephritis, cystitis, urethritis, and acute urethral syndrome. To perform this test, a urine sample is collected using methods such as clean catch, mid-stream void, or catheterization, ensuring that the sample is as uncontaminated as possible. The collected urine is then inoculated onto agar plates using a calibrated loop, followed by an incubation period that allows for bacterial growth. After incubation, the laboratory technician counts the colonies that have formed, providing a quantitative measure of bacterial presence. A colony count of 10,000 colony-forming units per milliliter (cfu/mL) is typically reported as 'organism present,' suggesting a potential infection. In cases where the culture reveals a mixture of different organisms, this is reported as 'mixed flora,' which often indicates contamination rather than a true infection.

© Copyright 2026 Coding Ahead. All rights reserved.

1. Indications

The bacterial culture, quantitative colony count of urine (CPT® Code 87086) is indicated for the following conditions:

  • Urinary Tract Infection (UTI) The test is performed to diagnose the presence of bacteria in the urine, which may indicate an acute or chronic urinary tract infection.
  • Pyelonephritis This condition, characterized by inflammation of the kidney due to bacterial infection, may be assessed through this culture to confirm the presence of pathogens.
  • Cystitis The test helps in diagnosing cystitis, an inflammation of the bladder often caused by bacterial infection.
  • Urethritis The culture can be used to identify bacterial causes of urethritis, which is inflammation of the urethra.
  • Acute Urethral Syndrome This syndrome, which presents with symptoms similar to a UTI, may also be evaluated using this quantitative culture to determine the underlying bacterial presence.

2. Procedure

The procedure for conducting a bacterial culture with a quantitative colony count of urine involves several key steps:

  • Step 1: Sample Collection A urine sample is obtained using one of three methods: clean catch, mid-stream void, or catheterization. These methods are chosen to minimize contamination and ensure that the sample accurately reflects the urinary tract's bacterial content.
  • Step 2: Inoculation Once the urine sample is collected, a calibrated loop is used to inoculate the specimen onto agar plates. This step is crucial as it allows for the growth of bacteria present in the urine under controlled laboratory conditions.
  • Step 3: Incubation The inoculated agar plates are then incubated for a specified period, typically at a controlled temperature, to promote bacterial growth. This incubation period is essential for allowing sufficient time for colonies to form.
  • Step 4: Colony Counting After incubation, the laboratory technician examines the agar plates and counts the number of bacterial colonies that have developed. This quantitative assessment provides critical information regarding the level of bacterial presence in the urine sample.
  • Step 5: Identification of Pathogens In addition to counting colonies, the technician may also identify potential pathogens present in the culture. This identification helps in determining the specific bacteria responsible for any infection.

3. Post-Procedure

After the bacterial culture and quantitative colony count procedure is completed, the results are analyzed and reported. A colony count of 10,000 cfu/mL or higher is typically interpreted as 'organism present,' indicating a potential infection that may require further clinical evaluation and treatment. If the culture reveals mixed flora, it is reported as 'mixed flora,' which often suggests contamination rather than a true infection. Clinicians may use these results to guide treatment decisions, including the choice of antibiotics if an infection is confirmed. It is important for healthcare providers to consider the clinical context and symptoms of the patient when interpreting the results of this test.

Short Descr URINE CULTURE/COLONY COUNT
Medium Descr CULTURE BACTERIAL QUANTTATIVE COLONY COUNT URINE
Long Descr Culture, bacterial; quantitative colony count, urine
Status Code Statutory Exclusion (from MPFS, may be paid under other methodologies)
Global Days XXX - Global Concept Does Not Apply
PC/TC Indicator (26, TC) 9 - Not Applicable
Multiple Procedures (51) 9 - Concept does not apply.
Bilateral Surgery (50) 9 - Concept does not apply.
Physician Supervisions 09 - Concept does not apply.
Assistant Surgeon (80, 82) 9 - Concept does not apply.
Co-Surgeons (62) 9 - Concept does not apply.
Team Surgery (66) 9 - Concept does not apply.
Diagnostic Imaging Family 99 - Concept Does Not Apply
CLIA Waived (QW) No
APC Status Indicator Conditionally packaged laboratory tests
Type of Service (TOS) 5 - Diagnostic Laboratory
Berenson-Eggers TOS (BETOS) T1F - Lab tests - bacterial cultures
MUE 3
CCS Clinical Classification 206 - Microscopic examination (bacterial smear, culture, toxicology)
90 Reference (outside) laboratory: when laboratory procedures are performed by a party other than the treating or reporting physician or other qualified health care professional, the procedure may be identified by adding modifier 90 to the usual procedure number.
GA Waiver of liability statement issued as required by payer policy, individual case
GZ Item or service expected to be denied as not reasonable and necessary
59 Distinct procedural service: under certain circumstances, it may be necessary to indicate that a procedure or service was distinct or independent from other non-e/m services performed on the same day. modifier 59 is used to identify procedures/services, other than e/m services, that are not normally reported together, but are appropriate under the circumstances. documentation must support a different session, different procedure or surgery, different site or organ system, separate incision/excision, separate lesion, or separate injury (or area of injury in extensive injuries) not ordinarily encountered or performed on the same day by the same individual. however, when another already established modifier is appropriate it should be used rather than modifier 59. only if no more descriptive modifier is available, and the use of modifier 59 best explains the circumstances, should modifier 59 be used. note: modifier 59 should not be appended to an e/m service. to report a separate and distinct e/m service with a non-e/m service performed on the same date, see modifier 25.
GW Service not related to the hospice patient's terminal condition
GY Item or service statutorily excluded, does not meet the definition of any medicare benefit or, for non-medicare insurers, is not a contract benefit
Q4 Service for ordering/referring physician qualifies as a service exemption
GV Attending physician not employed or paid under arrangement by the patient's hospice provider
26 Professional component: certain procedures are a combination of a physician or other qualified health care professional component and a technical component. when the physician or other qualified health care professional component is reported separately, the service may be identified by adding modifier 26 to the usual procedure number.
91 Repeat clinical diagnostic laboratory test: in the course of treatment of the patient, it may be necessary to repeat the same laboratory test on the same day to obtain subsequent (multiple) test results. under these circumstances, the laboratory test performed can be identified by its usual procedure number and the addition of modifier 91. note: this modifier may not be used when tests are rerun to confirm initial results; due to testing problems with specimens or equipment; or for any other reason when a normal, one-time, reportable result is all that is required. this modifier may not be used when other code(s) describe a series of test results (eg, glucose tolerance tests, evocative/suppression testing). this modifier may only be used for laboratory test(s) performed more than once on the same day on the same patient.
XU Unusual non-overlapping service, the use of a service that is distinct because it does not overlap usual components of the main service
51 Multiple procedures: when multiple procedures, other than e/m services, physical medicine and rehabilitation services or provision of supplies (eg, vaccines), are performed at the same session by the same individual, the primary procedure or service may be reported as listed. the additional procedure(s) or service(s) may be identified by appending modifier 51 to the additional procedure or service code(s). note: this modifier should not be appended to designated "add-on" codes (see appendix d).
76 Repeat procedure or service by same physician or other qualified health care professional: it may be necessary to indicate that a procedure or service was repeated by the same physician or other qualified health care professional subsequent to the original procedure or service. this circumstance may be reported by adding modifier 76 to the repeated procedure or service. note: this modifier should not be appended to an e/m service.
AY Item or service furnished to an esrd patient that is not for the treatment of esrd
CC Procedure code change (use 'cc' when the procedure code submitted was changed either for administrative reasons or because an incorrect code was filed)
Q6 Service furnished under a fee-for-time compensation arrangement by a substitute physician or by a substitute physical therapist furnishing outpatient physical therapy services in a health professional shortage area, a medically underserved area, or a rural area
QW Clia waived test
77 Repeat procedure by another physician or other qualified health care professional: it may be necessary to indicate that a basic procedure or service was repeated by another physician or other qualified health care professional subsequent to the original procedure or service. this circumstance may be reported by adding modifier 77 to the repeated procedure or service. note: this modifier should not be appended to an e/m service.
93 Synchronous telemedicine service rendered via telephone or other real-time interactive audio-only telecommunications system : synchronous telemedicine service is defined as a real-time interaction between a physician or other qualified health care professional and a patient who is located away at a distant site from the physician or other qualified health care professional. the totality of the communication of information exchanged between the physician or other qualified health care professional and the patient during the course of the synchronous telemedicine service must be of an amount and nature that is sufficient to meet the key components and/or requirements of the same service when rendered via a face-to-face interaction.
95 Synchronous telemedicine service rendered via a real-time interactive audio and video telecommunications system: synchronous telemedicine service is defined as a real-time interaction between a physician or other qualified health care professional and a patient who is located at a distant site from the physician or other qualified health care professional. the totality of the communication of information exchanged between the physician or other qualified health care professional and the patient during the course of the synchronous telemedicine service must be of an amount and nature that would be sufficient to meet the key components and/or requirements of the same service when rendered via a face-to-face interaction. modifier 95 may only be appended to the services listed in appendix p. appendix p is the list of cpt codes for services that are typically performed face-to-face, but may be rendered via a real-time (synchronous) interactive audio and video telecommunications system.
AQ Physician providing a service in an unlisted health professional shortage area (hpsa)
CR Catastrophe/disaster related
FP Service provided as part of family planning program
G2 Most recent urr reading of 60 to 64.9
GX Notice of liability issued, voluntary under payer policy
KX Requirements specified in the medical policy have been met
PD Diagnostic or related non diagnostic item or service provided in a wholly owned or operated entity to a patient who is admitted as an inpatient within 3 days
PN Non-excepted service provided at an off-campus, outpatient, provider-based department of a hospital
Q1 Routine clinical service provided in a clinical research study that is in an approved clinical research study
Q3 Live kidney donor surgery and related services
QJ Services/items provided to a prisoner or patient in state or local custody, however the state or local government, as applicable, meets the requirements in 42 cfr 411.4 (b)
SA Nurse practitioner rendering service in collaboration with a physician
TC Technical component; under certain circumstances, a charge may be made for the technical component alone; under those circumstances the technical component charge is identified by adding modifier 'tc' to the usual procedure number; technical component charges are institutional charges and not billed separately by physicians; however, portable x-ray suppliers only bill for technical component and should utilize modifier tc; the charge data from portable x-ray suppliers will then be used to build customary and prevailing profiles
X5 Diagnostic services requested by another clinician: for reporting services by a clinician who furnishes care to the patient only as requested by another clinician or subsequent and related services requested by another clinician; this modifier is reported for patient relationships that may not be adequately captured by the above alternative categories; reporting clinician service examples include but are not limited to, the radiologist's interpretation of an imaging study requested by another clinician
XE Separate encounter, a service that is distinct because it occurred during a separate encounter
XS Separate structure, a service that is distinct because it was performed on a separate organ/structure
Date
Action
Notes
2001-01-01 Changed Code description changed.
Pre-1990 Added Code added.
Code
Description
Code
Description
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