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Official Description

Chromosome analysis for breakage syndromes; baseline Sister Chromatid Exchange (SCE), 20-25 cells

© Copyright 2026 American Medical Association. All rights reserved.

Common Language Description

A chromosome analysis for breakage syndromes, as described by CPT® Code 88245, involves a specialized test known as Sister Chromatid Exchange (SCE). This analysis is crucial for identifying genetic abnormalities associated with breakage syndromes, which are conditions characterized by an increased susceptibility to chromosome breakage. Sister chromatids are the identical copies of a chromosome that are formed during DNA replication. The SCE test is particularly significant because exchanges between sister chromatids are infrequent under normal circumstances; however, certain environmental factors, such as exposure to specific chemicals, infectious agents, or physiological disorders, can elevate the frequency of these exchanges. The procedure utilizes peripheral blood lymphocytes, which are cultured in a separate, reportable procedure and stimulated to divide using a nonspecific antigen, such as phytohemagglutinin. To ensure that a sufficient number of cells are available for analysis, a spindle inhibitor is introduced to halt the cells in metaphase after a second mitotic division. This careful preparation allows for the observation of chromatid exchanges. Bromo-deoxy-uridine (BrdU) is incorporated into the culture medium for two complete cell cycles, facilitating differential staining of the chromatids. The staining process reveals dark Giemsa staining in chromatids with only one strand of DNA incorporated, while those with two strands exhibit lighter staining. If an exchange has occurred, the resulting chromosomes display a characteristic pattern known as harlequin chromosomes. This analysis is essential for diagnosing various breakage syndromes, including ataxia telangiectasia, Fanconi anemia, and fragile X syndrome, by providing insights into chromosomal integrity and function.

© Copyright 2026 Coding Ahead. All rights reserved.

1. Indications

The procedure described by CPT® Code 88245 is indicated for the evaluation of breakage syndromes, which may present with various symptoms and conditions. The following are specific indications for performing this chromosome analysis:

  • Breakage Syndromes The analysis is performed to identify genetic conditions characterized by increased chromosome breakage, such as ataxia telangiectasia, Fanconi anemia, and fragile X syndrome.
  • Increased Sister Chromatid Exchange The test is indicated when there is a suspicion of elevated SCE due to exposure to certain chemicals, infectious agents, or physiological disorders.

2. Procedure

The procedure for CPT® Code 88245 involves several critical steps to ensure accurate analysis of Sister Chromatid Exchange (SCE). The following outlines the procedural steps:

  • Step 1: Sample Collection Peripheral blood is collected from the patient, which serves as the source of lymphocytes for the analysis.
  • Step 2: Cell Culture The collected lymphocytes are cultured in a separate, reportable procedure. During this phase, the cells are stimulated to divide using a nonspecific antigen, such as phytohemagglutinin, which promotes mitotic activity.
  • Step 3: Spindle Inhibition A spindle inhibitor is added to the culture to halt the cells in metaphase after a second mitotic division. This step is crucial for ensuring that a sufficient number of mitotic cells are available for analysis.
  • Step 4: BrdU Incorporation Bromo-deoxy-uridine (BrdU) is introduced into the culture medium for the duration of two complete cell cycles. This compound allows for differential staining of the chromatids, facilitating the identification of exchanges.
  • Step 5: Staining and Analysis After the culture period, the cells are stained using Giemsa staining. Chromatids that incorporate only one strand of DNA will exhibit dark staining, while those with two strands will stain less darkly. The presence of dark staining on one arm of the chromosome indicates an exchange, resulting in the formation of harlequin chromosomes.

3. Post-Procedure

After the completion of the Sister Chromatid Exchange analysis, the results are evaluated to determine the presence of chromosomal exchanges indicative of breakage syndromes. The findings may require further investigation or additional testing, depending on the results. Patients may be advised on follow-up consultations to discuss the implications of the findings and any necessary next steps in their care. It is essential to document the results accurately and communicate them to the referring physician for appropriate management of the patient's condition.

Short Descr CHROMOSOME ANALYSIS 20-25
Medium Descr CHRMSM BREAKAGE BASELINE SISTER 20-25 CLL
Long Descr Chromosome analysis for breakage syndromes; baseline Sister Chromatid Exchange (SCE), 20-25 cells
Status Code Statutory Exclusion (from MPFS, may be paid under other methodologies)
Global Days XXX - Global Concept Does Not Apply
PC/TC Indicator (26, TC) 9 - Not Applicable
Multiple Procedures (51) 9 - Concept does not apply.
Bilateral Surgery (50) 9 - Concept does not apply.
Physician Supervisions 09 - Concept does not apply.
Assistant Surgeon (80, 82) 9 - Concept does not apply.
Co-Surgeons (62) 9 - Concept does not apply.
Team Surgery (66) 9 - Concept does not apply.
Diagnostic Imaging Family 99 - Concept Does Not Apply
CLIA Waived (QW) No
APC Status Indicator Conditionally packaged laboratory tests
Type of Service (TOS) 5 - Diagnostic Laboratory
Berenson-Eggers TOS (BETOS) T1H - Lab tests - other (non-Medicare fee schedule)
MUE 1
CCS Clinical Classification 206 - Microscopic examination (bacterial smear, culture, toxicology)
Date
Action
Notes
2011-01-01 Changed Short description changed.
Pre-1990 Added Code added.
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Description
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Description
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