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Official Description

Chromosome analysis for breakage syndromes; baseline breakage, score 50-100 cells, count 20 cells, 2 karyotypes (eg, for ataxia telangiectasia, Fanconi anemia, fragile X)

© Copyright 2026 American Medical Association. All rights reserved.

Common Language Description

A chromosome analysis for breakage syndromes, as described by CPT® Code 88248, involves a detailed examination of chromosomes to identify specific genetic abnormalities associated with conditions such as ataxia telangiectasia, Fanconi anemia, and fragile X syndrome. This analysis is crucial for diagnosing breakage syndromes, which are characterized by an increased susceptibility to chromosome breakage, leading to various health issues. The procedure entails culturing peripheral blood lymphocytes, which are white blood cells that play a vital role in the immune response. These cells are stimulated to divide using specific antigens, allowing for the observation of chromosomes during the metaphase stage of cell division. During the analysis, a baseline breakage score is established by evaluating 50 to 100 cells, with a detailed count of 20 cells to ensure accuracy in identifying chromosomal abnormalities. The process includes performing two karyotypes, which are comprehensive assessments of the size, shape, and number of chromosomes present in the cultured cells. Karyotyping employs various staining techniques, such as Giemsa banding, to visualize the chromosomes and identify any structural anomalies, including extra or missing chromosome segments. This meticulous approach enables healthcare professionals to detect and characterize breakage syndromes effectively, facilitating appropriate clinical management and genetic counseling for affected individuals.

© Copyright 2026 Coding Ahead. All rights reserved.

1. Indications

The chromosome analysis for breakage syndromes, as outlined in CPT® Code 88248, is indicated for the following conditions:

  • Ataxia Telangiectasia - A genetic disorder that affects the nervous system and immune system, characterized by progressive neurological problems and an increased risk of cancer.
  • Fanconi Anemia - A rare genetic disorder leading to bone marrow failure, physical abnormalities, and an increased risk of cancer, particularly acute myeloid leukemia.
  • Fragile X Syndrome - A genetic condition causing intellectual disability, behavioral challenges, and various physical features, often associated with a mutation in the FMR1 gene.

2. Procedure

The procedure for chromosome analysis for breakage syndromes involves several critical steps to ensure accurate results:

  • Cell Culture - Peripheral blood lymphocytes are collected and cultured in a controlled laboratory environment. This process involves stimulating the lymphocytes to divide using a specific antigen, such as phytohemagglutinin, which promotes cell division and allows for the observation of chromosomes during the metaphase stage.
  • Chromosome Preparation - A spindle inhibitor is added to the culture to halt the cells in metaphase, ensuring that a sufficient number of mitotic cells are available for analysis. This step is crucial for obtaining clear and usable chromosome samples.
  • Staining and Scoring - Bromo-deoxy-uridine (BrdU) is incorporated into the culture medium for two complete cell cycles, allowing for differential staining of chromatids. The analysis involves scoring 50 to 100 cells, with a detailed count of 20 cells to identify any chromosomal abnormalities. The stained chromosomes are then examined under a microscope to detect any structural changes.
  • Karyotyping - Two karyotypes are performed to evaluate the size, shape, and number of chromosomes. This involves using banding techniques, such as Giemsa banding, to visualize the chromosomes and identify any extra, missing, or abnormal chromosome segments. The presence of two karyotypes may indicate chromosomal abnormalities, where some cells exhibit a normal chromosome count while others show signs of breakage or translocation.

3. Post-Procedure

After the chromosome analysis is completed, the results are compiled and interpreted by a qualified geneticist or pathologist. The findings can provide critical information for diagnosing breakage syndromes and guiding further clinical management. Patients may require additional follow-up testing or genetic counseling based on the results. It is essential to communicate the findings clearly to the healthcare team and the patient to ensure appropriate care and support. Additionally, any identified chromosomal abnormalities may necessitate monitoring for associated health risks, including cancer predisposition, depending on the specific breakage syndrome diagnosed.

Short Descr CHROMOSOME ANALYSIS 50-100
Medium Descr CHRMSM BREAKAGE BASELINE BREAKAGE 50-100 CLL
Long Descr Chromosome analysis for breakage syndromes; baseline breakage, score 50-100 cells, count 20 cells, 2 karyotypes (eg, for ataxia telangiectasia, Fanconi anemia, fragile X)
Status Code Statutory Exclusion (from MPFS, may be paid under other methodologies)
Global Days XXX - Global Concept Does Not Apply
PC/TC Indicator (26, TC) 9 - Not Applicable
Multiple Procedures (51) 9 - Concept does not apply.
Bilateral Surgery (50) 9 - Concept does not apply.
Physician Supervisions 09 - Concept does not apply.
Assistant Surgeon (80, 82) 9 - Concept does not apply.
Co-Surgeons (62) 9 - Concept does not apply.
Team Surgery (66) 9 - Concept does not apply.
Diagnostic Imaging Family 99 - Concept Does Not Apply
CLIA Waived (QW) No
APC Status Indicator Conditionally packaged laboratory tests
Type of Service (TOS) 5 - Diagnostic Laboratory
Berenson-Eggers TOS (BETOS) T1H - Lab tests - other (non-Medicare fee schedule)
MUE 1
CCS Clinical Classification 206 - Microscopic examination (bacterial smear, culture, toxicology)
Date
Action
Notes
2011-01-01 Changed Short description changed.
Pre-1990 Added Code added.
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