Coding Ahead
CasePilot
Medical Coding Assistant
Case2Code
Search and Code Lookup Tool
CareerCenter
Medical Coding Job Board
Log in Register free account

Need help choosing the right code?

Ask CasePilot about procedures, modifiers, bundling, and coding guidance.

Try CasePilot

Official Description

Chromosome analysis, in situ for amniotic fluid cells, count cells from 6-12 colonies, 1 karyotype, with banding

© Copyright 2026 American Medical Association. All rights reserved.

Common Language Description

Chromosome analysis is a laboratory procedure that examines the genetic material within cells to identify any chromosomal abnormalities. This specific analysis, coded as CPT® 88269, is performed on amniotic fluid cells collected during an amniocentesis procedure. The analysis is particularly relevant for patients who may be at increased risk for chromosomal disorders due to factors such as advanced maternal age, abnormal findings from prenatal ultrasounds, or abnormal results from maternal blood screenings. Additionally, it is indicated for individuals with a history of a previous child with a chromosomal anomaly, known familial chromosome rearrangements, or recognized familial genetic disorders. The process involves culturing the amniotic fluid cells, counting cells from 6 to 12 colonies, and performing one karyotype analysis with banding techniques. Karyotyping assesses the number, size, and shape of chromosomes, while banding techniques, such as Giemsa banding, allow for the identification of specific chromosomal structures and abnormalities. Normal karyotypes are characterized by 46 chromosomes, with females typically having 46 XX and males having 46 XY configurations.

© Copyright 2026 Coding Ahead. All rights reserved.

1. Indications

Chromosome analysis, specifically CPT® 88269, is indicated for several clinical scenarios that may suggest the presence of chromosomal abnormalities. The following conditions warrant this analysis:

  • Advanced Maternal Age - Women of advanced maternal age are at a higher risk for chromosomal abnormalities in their offspring.
  • Abnormal Prenatal Ultrasound Findings - Any unusual findings during prenatal ultrasounds may prompt further investigation through chromosome analysis.
  • Abnormal Maternal Blood Screen Results - Results from maternal blood screenings that indicate potential genetic issues can lead to chromosome analysis.
  • Previous Child with a Chromosome Anomaly - A history of having a child with chromosomal abnormalities increases the likelihood of recurrence, necessitating chromosome analysis.
  • Known Familial Chromosome Rearrangement - If there is a known genetic rearrangement within the family, chromosome analysis can help assess the risk for the current pregnancy.
  • Known Familial Genetic Disorder - Families with a history of genetic disorders may require chromosome analysis to evaluate the risk of these conditions in the fetus.

2. Procedure

The procedure for chromosome analysis using CPT® 88269 involves several critical steps to ensure accurate results. The first step is the performance of an amniocentesis, where amniotic fluid is collected from the uterus using specialized syringes. This fluid contains fetal cells that are essential for the analysis. The collected amniotic fluid is then placed in screw-top tubes containing a tissue culture transport medium to preserve the cells during transport to the laboratory.

  • Cell Culture - Once in the laboratory, the amniotic fluid cells are cultured in one or more different culture mediums. This process allows the cells to multiply, providing a sufficient number of cells for analysis.
  • Counting Colonies - After culturing, the cells from 6 to 12 colonies are counted. This step is crucial as it ensures that there are enough cells to perform a reliable karyotype analysis.
  • Karyotyping - A single karyotype is then performed on the cultured cells. Karyotyping involves evaluating the size, shape, and number of chromosomes present in the cell samples.
  • Chromosome Banding - Banding techniques, such as Giemsa banding, are employed to stain the chromosomes. This staining process involves several steps, including acetic acid fixation, air drying, and denaturing the chromosomes using proteolytic enzymes or other methods, followed by Giemsa staining. Alternatively, fluorochrome and Q-banding stains may be used.
  • Identification of Chromosomal Abnormalities - The final step involves identifying any extra, missing, or abnormal positions of chromosome pieces. This analysis helps in determining the presence of chromosomal abnormalities.

3. Post-Procedure

After the chromosome analysis is completed, the results are typically reviewed and interpreted by a geneticist or a qualified healthcare professional. Patients may receive counseling regarding the findings, especially if abnormalities are detected. The expected recovery from the amniocentesis procedure itself is generally quick, with most patients able to resume normal activities shortly after. However, it is essential to monitor for any complications, such as bleeding or infection, following the procedure. The results of the chromosome analysis can provide critical information for further management and decision-making regarding the pregnancy.

Short Descr CHROMOSOME ANALYS AMNIOTIC
Medium Descr CHRMSM SITU AMNIOTIC CLL 6-12 COLONIES 1KARYOTYP
Long Descr Chromosome analysis, in situ for amniotic fluid cells, count cells from 6-12 colonies, 1 karyotype, with banding
Status Code Statutory Exclusion (from MPFS, may be paid under other methodologies)
Global Days XXX - Global Concept Does Not Apply
PC/TC Indicator (26, TC) 9 - Not Applicable
Multiple Procedures (51) 9 - Concept does not apply.
Bilateral Surgery (50) 9 - Concept does not apply.
Physician Supervisions 09 - Concept does not apply.
Assistant Surgeon (80, 82) 9 - Concept does not apply.
Co-Surgeons (62) 9 - Concept does not apply.
Team Surgery (66) 9 - Concept does not apply.
Diagnostic Imaging Family 99 - Concept Does Not Apply
CLIA Waived (QW) No
APC Status Indicator Conditionally packaged laboratory tests
Type of Service (TOS) 5 - Diagnostic Laboratory
Berenson-Eggers TOS (BETOS) T1H - Lab tests - other (non-Medicare fee schedule)
MUE 2
CCS Clinical Classification 206 - Microscopic examination (bacterial smear, culture, toxicology)
90 Reference (outside) laboratory: when laboratory procedures are performed by a party other than the treating or reporting physician or other qualified health care professional, the procedure may be identified by adding modifier 90 to the usual procedure number.
Date
Action
Notes
2011-01-01 Changed Short description changed.
Pre-1990 Added Code added.
Code
Description
Code
Description
CasePilot

Get instant expert-level medical coding assistance.

Ask about:
CPT Codes Guidelines Modifiers Crosswalks NCCI Edits Compliance Medicare Coverage
Example: "What is CPT code 99213?" or "Guidelines for E/M services"