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Official Description

Molecular cytogenetics; interphase in situ hybridization, analyze 100-300 cells

© Copyright 2026 American Medical Association. All rights reserved.

Common Language Description

The CPT® Code 88275 refers to a laboratory test that focuses on molecular cytogenetics through the technique of interphase in situ hybridization. This procedure is designed to analyze a sample of 100 to 300 cells, which can be derived from various biological sources such as bone marrow, blood, amniotic fluid, chorionic villi, and other body tissues or tumors. Molecular cytogenetics is a branch of genetics that studies the structure and function of chromosomes, including their abnormalities and variations within the genome. The interphase in situ hybridization method, specifically interphase fluorescence in situ hybridization (I-FISH), allows for the examination of the nuclei of eukaryotic cells, providing insights into a wider range of cell types. Samples for this test are typically obtained through procedures that are reported separately, including venipuncture, bone marrow aspiration, amniocentesis, chorionic villus sampling, and biopsy. The analysis performed using this code is crucial for rapid detection of chromosomal aneuploidies, particularly for chromosomes X, Y, 13, 18, and 21, in maternal amniotic fluid or chorionic villi, as well as in whole blood from infants. Additionally, this test plays a significant role in the risk stratification of patients with newly diagnosed or relapsed multiple myeloma, the detection of genomic abnormalities in chronic lymphocytic leukemia, and the diagnosis and classification of hematopoietic neoplasms presenting with eosinophilia. Furthermore, the examination of blood and bone marrow samples can support the diagnosis of acute lymphocytic leukemia and confirm the presence of PML-RARA translocation in acute promyelocytic leukemia. It is also utilized to exclude cryptic BCR-ABL1 rearrangements in myelogenous leukemia patients or PDGFRA abnormalities in those with neoplastic eosinophilia. The test is instrumental in diagnosing and predicting aggressive morphologic features in cases of Burkitt lymphoma versus diffuse large B-cell lymphoma, as well as monitoring minimal residual disease in therapy-related myelodysplastic syndrome (MDS) or acute myelogenous leukemia associated with MDS. Lastly, whole blood samples may be analyzed to identify significant translocations in patients newly diagnosed with acute myeloid leukemia. It is important to note that CPT® Code 88274 is applicable when analyzing 25-99 cells, while CPT® Code 88275 is specifically designated for the analysis of 100-300 cells.

© Copyright 2026 Coding Ahead. All rights reserved.

1. Indications

The procedure associated with CPT® Code 88275 is indicated for various clinical scenarios where molecular cytogenetic analysis is necessary. The following conditions and situations warrant the use of this test:

  • Detection of Aneuploidy - Rapid detection of aneuploidy in chromosomes X, Y, 13, 18, and 21 in maternal amniotic fluid or chorionic villi, as well as in whole blood from infants.
  • Multiple Myeloma - Risk stratification in individuals with newly diagnosed or relapsed multiple myeloma.
  • Chronic Lymphocytic Leukemia - Detection of genomic abnormalities in patients diagnosed with chronic lymphocytic leukemia.
  • Eosinophilia - Aid in the diagnosis and classification of eosinophilia presenting with hematopoietic neoplasms.
  • Acute Lymphocytic Leukemia - Support the diagnosis of acute lymphocytic leukemia.
  • Acute Promyelocytic Leukemia - Rapid confirmation of PML-RARA translocation for acute promyelocytic leukemia.
  • Myelogenous Leukemia - Exclusion of cryptic BCR-ABL1 rearrangement in patients with myelogenous leukemia.
  • Neoplastic Eosinophilia - Exclusion of PDGFRA abnormality in patients with neoplastic eosinophilia.
  • Burkitt Lymphoma vs. Diffuse Large B-Cell Lymphoma - Diagnosis and prediction of aggressive morphologic features between Burkitt lymphoma and diffuse large B-cell lymphoma.
  • Minimal Residual Disease - Diagnosis, prediction, or monitoring of minimal residual disease in therapy-related myelodysplastic syndrome (MDS) or acute myelogenous leukemia associated with MDS.
  • Acute Myeloid Leukemia - Identification of important translocations in patients with newly diagnosed acute myeloid leukemia.

2. Procedure

The procedure for CPT® Code 88275 involves several critical steps to ensure accurate molecular cytogenetic analysis. The following outlines the procedural steps:

  • Sample Collection - Samples are obtained through various methods such as venipuncture, bone marrow aspiration, amniocentesis, chorionic villus sampling, or biopsy. Each method is selected based on the clinical context and the type of tissue or fluid required for analysis.
  • Cell Preparation - Once the samples are collected, they undergo preparation to isolate the cells of interest. This may involve centrifugation and other laboratory techniques to concentrate the cells and prepare them for hybridization.
  • Interphase In Situ Hybridization - The prepared cells are subjected to interphase fluorescence in situ hybridization (I-FISH). This technique allows for the visualization of specific chromosomal abnormalities by using fluorescent probes that bind to target DNA sequences within the cell nuclei.
  • Cell Analysis - The analysis is performed on a specified number of cells, in this case, 100-300 cells. The laboratory technician examines the fluorescence signals to identify any chromosomal abnormalities or aneuploidies present in the sample.
  • Data Interpretation - The results of the analysis are interpreted by qualified personnel, who assess the findings in the context of the patient's clinical history and other diagnostic information. This interpretation is crucial for making informed clinical decisions.

3. Post-Procedure

After the procedure associated with CPT® Code 88275, the following post-procedure considerations are important:

Patients may require monitoring for any potential complications related to the sample collection method used, such as bleeding or infection, particularly in cases of bone marrow aspiration or biopsy. The results of the molecular cytogenetic analysis will typically be communicated to the referring physician, who will discuss the findings with the patient and determine the next steps in management based on the results. It is essential for healthcare providers to integrate the findings from this test with other clinical data to guide treatment decisions, risk assessment, and further diagnostic evaluations as necessary. Follow-up appointments may be scheduled to review results and discuss implications for treatment or additional testing.

Short Descr CYTOGENETICS 100-300
Medium Descr MOLEC CYTG INTERPHASE ISH ANALYZE 100-300 CLL
Long Descr Molecular cytogenetics; interphase in situ hybridization, analyze 100-300 cells
Status Code Statutory Exclusion (from MPFS, may be paid under other methodologies)
Global Days XXX - Global Concept Does Not Apply
PC/TC Indicator (26, TC) 9 - Not Applicable
Multiple Procedures (51) 9 - Concept does not apply.
Bilateral Surgery (50) 9 - Concept does not apply.
Physician Supervisions 09 - Concept does not apply.
Assistant Surgeon (80, 82) 9 - Concept does not apply.
Co-Surgeons (62) 9 - Concept does not apply.
Team Surgery (66) 9 - Concept does not apply.
Diagnostic Imaging Family 99 - Concept Does Not Apply
CLIA Waived (QW) No
APC Status Indicator Conditionally packaged laboratory tests
Type of Service (TOS) 5 - Diagnostic Laboratory
Berenson-Eggers TOS (BETOS) T1H - Lab tests - other (non-Medicare fee schedule)
MUE 12
CCS Clinical Classification 235 - Other Laboratory
90 Reference (outside) laboratory: when laboratory procedures are performed by a party other than the treating or reporting physician or other qualified health care professional, the procedure may be identified by adding modifier 90 to the usual procedure number.
59 Distinct procedural service: under certain circumstances, it may be necessary to indicate that a procedure or service was distinct or independent from other non-e/m services performed on the same day. modifier 59 is used to identify procedures/services, other than e/m services, that are not normally reported together, but are appropriate under the circumstances. documentation must support a different session, different procedure or surgery, different site or organ system, separate incision/excision, separate lesion, or separate injury (or area of injury in extensive injuries) not ordinarily encountered or performed on the same day by the same individual. however, when another already established modifier is appropriate it should be used rather than modifier 59. only if no more descriptive modifier is available, and the use of modifier 59 best explains the circumstances, should modifier 59 be used. note: modifier 59 should not be appended to an e/m service. to report a separate and distinct e/m service with a non-e/m service performed on the same date, see modifier 25.
GZ Item or service expected to be denied as not reasonable and necessary
91 Repeat clinical diagnostic laboratory test: in the course of treatment of the patient, it may be necessary to repeat the same laboratory test on the same day to obtain subsequent (multiple) test results. under these circumstances, the laboratory test performed can be identified by its usual procedure number and the addition of modifier 91. note: this modifier may not be used when tests are rerun to confirm initial results; due to testing problems with specimens or equipment; or for any other reason when a normal, one-time, reportable result is all that is required. this modifier may not be used when other code(s) describe a series of test results (eg, glucose tolerance tests, evocative/suppression testing). this modifier may only be used for laboratory test(s) performed more than once on the same day on the same patient.
GA Waiver of liability statement issued as required by payer policy, individual case
Q1 Routine clinical service provided in a clinical research study that is in an approved clinical research study
XU Unusual non-overlapping service, the use of a service that is distinct because it does not overlap usual components of the main service
XE Separate encounter, a service that is distinct because it occurred during a separate encounter
TC Technical component; under certain circumstances, a charge may be made for the technical component alone; under those circumstances the technical component charge is identified by adding modifier 'tc' to the usual procedure number; technical component charges are institutional charges and not billed separately by physicians; however, portable x-ray suppliers only bill for technical component and should utilize modifier tc; the charge data from portable x-ray suppliers will then be used to build customary and prevailing profiles
26 Professional component: certain procedures are a combination of a physician or other qualified health care professional component and a technical component. when the physician or other qualified health care professional component is reported separately, the service may be identified by adding modifier 26 to the usual procedure number.
76 Repeat procedure or service by same physician or other qualified health care professional: it may be necessary to indicate that a procedure or service was repeated by the same physician or other qualified health care professional subsequent to the original procedure or service. this circumstance may be reported by adding modifier 76 to the repeated procedure or service. note: this modifier should not be appended to an e/m service.
AQ Physician providing a service in an unlisted health professional shortage area (hpsa)
GC This service has been performed in part by a resident under the direction of a teaching physician
GW Service not related to the hospice patient's terminal condition
GY Item or service statutorily excluded, does not meet the definition of any medicare benefit or, for non-medicare insurers, is not a contract benefit
Q0 Investigational clinical service provided in a clinical research study that is in an approved clinical research study
XS Separate structure, a service that is distinct because it was performed on a separate organ/structure
Date
Action
Notes
2011-01-01 Changed Short description changed.
1999-01-01 Added First appearance in code book in 1999.
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